Environmental Genomics 2020

This course has been cancelled due to COVID-19 restrictions. Those interested in this genomics course are invited to contact course directors Joe Shaw or John Colbourne with design and analysis questions or for questions about this training opportunity.

2020 Environmental Genomics Flyer

This training initiative in Environmental Genomics at the MDI Biological Laboratory seeks to guide research towards understanding how gene function is influenced by environmental conditions while accounting for variation that exists within and among natural populations. Two significant advances create opportunities to finally link gene-environment interactions to the fitness of individuals and to population-level outcomes affecting biodiversity and ecosystem functioning:

• Genome and transcriptome sequences are now available for a growing number of species whose ecology and physiology are well understood.
• Sophisticated tools for high-throughput biology, statistical analysis and informatics are rapidly becoming more accessible to single investigators.

This course is built on the paradigm that the research field will most effectively grow by training early career environmental scientists to properly design comprehensive, large-scale, experiments enabled by drastically increased sample-throughput and lower costs. Most importantly, the challenges of manipulating and analyzing population-level genomics (big) data must be addressed.

Topics covered in seminar and laboratory formats:

• bioinformatics, including sequence analysis workflows and use of R statistical analysis tools
• experimental design for environmental genomics research
• machine learning and artificial intelligence approaches to data analyses
• integrated, population-level transcriptomics and genomics
• epigenetic influences and methods of analyses
• single-cell platforms and considerations.

The course provides a significant introduction and some hands-on real-world project training experience for PhD students and early career scientists, who will acquire sufficient knowledge, and build an important network of experts and peer investigators, to initiate their own environmental genomics study and launch Environmental Scientist careers in academia and industry.